Software
PICSL develops and distributes open-source software for medical image analysis.
Interactive open-source application for segmenting structures in 3D and 4D medical images, with over 10,000 monthly downloads.
Advanced Normalization Tools: accurate diffeomorphic image registration, template building and image analysis.
Fast, training-free diffeomorphic registration on the GPU, using adaptive Riemannian optimization.
Very fast CPU-based affine and deformable registration for pipelines that register many images in parallel.
Command-line Swiss army knife for medical image processing that complements ITK-SNAP.
Automatic segmentation of hippocampal subfields and medial temporal lobe cortices in MRI.
Web-based platform for archiving and annotating digital histopathology images and training deep learning classifiers.
Open-source toolkit for diffusion MRI simulation, image reconstruction and tractography.
Interactive histology reconstruction, MRI co-registration and manual segmentation of large histology datasets.
Univariate and multivariate lesion-symptom mapping of brain regions whose damage causes specific cognitive deficits.
R toolkit for automatic segmentation of chronic stroke lesions.
Predicts the side of seizure onset in temporal lobe epilepsy from PET asymmetries.